Train XGBoost Model in Sparkling Water -------------------------------------- Sparkling Water provides API for H2O XGBoost in both Scala and Python. The following sections describe how to train XGBoost model in Sparkling Water in both languages. Running XGBoost in Scala ~~~~~~~~~~~~~~~~~~~~~~~~ First, let's start Sparkling Shell as .. code:: shell ./bin/sparkling-shell Start H2O cluster inside the Spark environment .. code:: scala import org.apache.spark.h2o._ import java.net.URI val hc = H2OContext.getOrCreate(spark) Parse the data using H2O and convert them to Spark Frame .. code:: scala val frame = new H2OFrame(new URI("https://raw.githubusercontent.com/h2oai/sparkling-water/master/examples/smalldata/prostate/prostate.csv")) val sparkFrame = hc.asDataFrame(frame) Train the model. You can configure all the available XGBoost arguments using provided setters, such as the predictions column. .. code:: scala import org.apache.spark.ml.h2o.algos.H2OXGBoost val estimator = new H2OXGBoost().setLabelCol("AGE") val model = estimator.fit(sparkFrame) You can also get raw model details by calling the *getModelDetails()* method available on the estimator as: .. code:: scala model.getModelDetails() Run Predictions .. code:: scala model.transform(sparkFrame) Running XGBoost in Python ~~~~~~~~~~~~~~~~~~~~~~~~~ First, let's start PySparkling Shell as .. code:: shell ./bin/pysparkling Start H2O cluster inside the Spark environment .. code:: python from pysparkling import * hc = H2OContext.getOrCreate(spark) Parse the data using H2O and convert them to Spark Frame .. code:: python import h2o frame = h2o.import_file("https://raw.githubusercontent.com/h2oai/sparkling-water/master/examples/smalldata/prostate/prostate.csv") spark_frame = hc.as_spark_frame(frame) Train the model. You can configure all the available XGBoost arguments using provided setters, such as the predictions column. .. code:: python from pysparkling.ml import H2OXGBoost estimator = H2OXGBoost(labelCol="AGE") model = estimator.fit(spark_frame) You can also get raw model details by calling the *getModelDetails()* method available on the estimator as: .. code:: python model.getModelDetails() Run Predictions .. code:: python model.transform(spark_frame) XGBoost Memory Configuration ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ H2O XGBoost uses additionally to Java memory, off-heap memory. This means that it requires some additionally memory available on the system. When running on YARN, please make sure to set the ``memoryOverhead`` so XGBoost has enough memory. On Spark, the following properties might be set - ``spark.yarn.am.memoryOverhead`` - in case of YARN Cluster deployment - ``spark.yarn.driver.memoryOverhead`` - in case of YARN client and other deployments - ``spark.yarn.executor.memoryOverhead`` - in all deployment scenarios On YARN, the container size is determined by ``application_memory * memory_overhead``. Therefore, by specifying the overhead, we are also allocating some additional off-heap memory which XGBoost can use. In Spark Standalone Mode or IBM Conductor environment, please make sure to configure the following configurations: - ``spark.memory.offHeap.enabled=true`` - ``spark.memory.offHeap.size=4G`` - example of setting this property to 4G of off-heap memory